Human Microbiome Drugs Market
Human Microbiome Drugs Market by Type (Live Biotherapeutic Products, Fecal Microbiota-derived Therapeutics), Disease (Gastrointestinal, Infectious), End User (Hospitals, Clinics, Long-term Care) - Global Forecast to 2031
OVERVIEW
Source: Secondary Research, Interviews with Experts, MarketsandMarkets Analysis
The human microbiome drugs market is projected to reach USD 2.13 billion by 2031 from USD 0.35 billion in 2025, at a CAGR of 35.2% from 2025 to 2031. The human microbiome drugs market is growing, driven by the increasing clinical success of live biotherapeutic products, rising prevalence of chronic and recurrent diseases, and expanding therapeutic applications beyond gastrointestinal disorders into metabolic, immune, and neurological conditions.
KEY TAKEAWAYS
-
By RegionThe North America human microbiome market accounted for a 96.7% revenue share in 2024. The growth in this segment is driven by a strong clinical pipeline, an advanced regulatory framework, and a high concentration of leading microbiome drug developers in the region.
-
By Route of AdministrationBy route of administration, the oral route of administration segment accounted for the largest share of the Human Microbiome Drugs Market in 2024. This growth is driven by targeted GI delivery, high patient compliance, and scalable formulation of live biotherapeutics.
-
By DiseaseBy disease, the gastrointestinal disease segment accounted for the largest share of the human microbiome drugs market in 2024 due to the high prevalence of gut-related disorders.
-
By End UserBy end user, the hospitals & clinics segment accounted for the largest share of the Human Microbiome Drugs Market in 2024. The growth of this segment is driven by its central role in diagnosing, prescribing, and administering advanced microbiome-based therapies.
-
Competitive LandscapeSeres Therapeutics, Ferring B.V., and MaaT Pharma were identified as key players in the human microbiome drugs market, given their strong market share and service footprint.
-
Competitive LandscapeAOBiome, Guangzhou Zhiyi Biotechnology Co., Ltd., and NuBiyota, among others, have distinguished themselves among startups and SMEs by securing strong footholds in specialized niche areas, underscoring their potential as emerging market leaders
The human microbiome drugs market is attracting significant attention, driven by major advances in live biotherapeutics and microbiome-modulating drug pipelines, growing clinical evidence, and increased investment from pharmaceutical and biotechnology developers. As programs progress into mid- and late-stage trials, demand is rising for targeted microbial consortia, engineered strains, and precision probiotic formulations to treat gastrointestinal, metabolic, immune, and neurological conditions. Moreover, growing collaborations between industry and academic research centers are becoming a major driver of innovation in strain engineering, formulation stability, and delivery technologies.
TRENDS & DISRUPTIONS IMPACTING CUSTOMERS' CUSTOMERS
The human microbiome drugs market is shifting from traditional revenue sources, such as conventional probiotics, symptomatic GI treatments, and limited-use microbiome products, toward innovative drug solutions, including multi-strain live biotherapeutics, engineered microbial consortia, postbiotic-based drugs, and personalized microbiome-modulating therapies. Future growth is driven by advanced oral and targeted delivery systems and microbiome-based companion diagnostics. These innovations address client imperatives such as improved drug stability, standardized treatments, and EHR-integrated decision support, ultimately enabling faster symptom relief, greater treatment precision, safer alternatives to antibiotics, and lower hospitalization rates.
Source: Secondary Research, Interviews with Experts, MarketsandMarkets Analysis
MARKET DYNAMICS
Level
-
Growing clinical validation of live biotherapeutic products

-
Rising burden of chronic and recurrent diseases
Level
-
Complexity of microbial strain behavior and variability
-
High manufacturing & stability constraints
Level
-
Focus on emerging applications
-
Integration of AI & microbiome analytics
Level
-
Long clinical development timeline
Source: Secondary Research, Interviews with Experts, MarketsandMarkets Analysis
Driver: Growing clinical validation of live biotherapeutic products
The human microbiome drugs market is gaining popularity, driven by a rising number of studies confirming the safety, efficacy, and therapeutic potential of microbiome drugs. One of the main reasons for this is the growing clinical validation of live biotherapeutic products (LBPs). Regulatory agencies are becoming increasingly comfortable with LBPs as the number of positive outcomes in gastrointestinal, metabolic, and immune-related disorders continues to grow. As a result, they are becoming more open to investments from biopharmaceutical companies. The market is gaining credibility due to the growing number of late-stage clinical trials. This expanding evidence base is leading to a rapid increase in microbiome-based therapeutic pipelines.
Restraint: Complexity of microbial strain behavior and variability
Market growth is constrained by the inherent complexity and variability of microbial strain behavior, which complicate drug development, standardization, and clinical predictability. Differences in colonization potential, microbiome interactions, patient microbiota composition, and environmental influences make it challenging to achieve consistent therapeutic outcomes. These biological uncertainties increase development risks, require extensive characterization, and often slow regulatory progress. As a result, developers must invest heavily in advanced analytics and strain-stability technologies to mitigate variability-related constraints.
Opportunity: Focus on emerging applications
There is substantial growth potential in the new application of microbiome-based drugs, distinct from traditional treatments for gastrointestinal diseases. Studies show that changes in the microbiome can be used to treat various diseases across therapeutic areas, including cancer, immune system diseases, metabolic disorders, nervous system diseases, and women's health. These less explored uses of the microbiome have very high unmet needs and strong potential for commercial success. Along with developments in precision microbiome engineering, targeted delivery systems, and multi-strain consortia, there are increasing possibilities for novel product innovations that can eventually make microbiome drugs a revolutionary category across multiple clinical domains with high value.
Challenge: Long clinical development timeline
One of the biggest obstacles the human microbiome drugs industry faces is the time-consuming and complex clinical development required to confirm safety, mechanism of action, and long-term efficacy. The need for detailed characterization, stability, and patient-specific responses, as set by regulatory authorities, also contributes to the length of the studies. Moreover, differences in host microbiome profiles usually require larger, more stratified trials, thereby increasing the time and money needed for the studies. Such long trials postpone the time when the products can be sold and thus create a considerable financial strain on new microbiome-based biopharmaceutical developers, which is the main reason behind the existence of these extended pathways.
HUMAN MICROBIOME DRUGS MARKET: COMMERCIAL USE CASES ACROSS INDUSTRIES
| COMPANY | USE CASE DESCRIPTION | BENEFITS |
|---|---|---|
|
|
Seres Therapeutics partnered with Nestlé Health Science to advance development and commercialization of microbiome therapeutics. The collaboration focuses on leveraging Seres’ microbiome platform to develop treatments for diseases linked to the gut microbiome, including recurrent Clostridioides difficile infection (rCDI) | Enabled cGMP-compliant production of microbiome therapeutics |
Logos and trademarks shown above are the property of their respective owners. Their use here is for informational and illustrative purposes only.
MARKET ECOSYSTEM
The human microbiome drugs market ecosystem comprises the following components: raw material suppliers (Merck KGaA, Titan Biotech, TM Media), drug developers (Finch Therapeutics, Seres Therapeutics), regulatory authorities (EEMA, US FDA), and end users (NHS, Karolinska University Hospital). Raw material suppliers provide essential inputs, including microbial strains, culture media, fermentation nutrients, and specialized substrates, that manufacturers use to develop and produce microbiome-based therapeutics and live biotherapeutic products. Regulatory authorities set the pathways to approval, safety standards, and clinical evaluation requirements to ensure the quality, safety, and effectiveness of microbiome drugs. End users, comprising hospitals, research institutions, and public health organizations, are instrumental in the clinical use of these therapeutics for treatments, research studies, and translational applications.
Logos and trademarks shown above are the property of their respective owners. Their use here is for informational and illustrative purposes only.
MARKET SEGMENTS
Source: Secondary Research, Interviews with Experts, MarketsandMarkets Analysis
Human Microbiome Drugs, By Disease
In 2024, the gastrointestinal diseases segment captured the largest revenue share of the human microbiome drugs market, driven by a growing patient population with GI disorders, strong clinical evidence supporting microbiome-based interventions, and a robust pipeline of targeted therapies. GI-focused therapeutics address conditions such as Clostridioides difficile infection, inflammatory bowel disease, and irritable bowel syndrome, where modulation of the gut microbiome has demonstrated significant efficacy.
Human Microbiome Drugs, By Route of Administration
By the oral route of administration, the human microbiome drugs market had the largest share in 2024. This route was chosen as the preferred one because it is very convenient, patients readily comply with it, and it is the most appropriate way to target the gut microbiome. Oral formulations provide a method of targeted delivery of live biotherapeutics to the gastrointestinal tract, thereby ensuring the microbial community there is effectively modulated. In addition, improvements in encapsulation and formulation technologies make the product more stable and more potent, and allow controlled release, thereby reinforcing the oral route as the predominantly chosen route in microbiome therapeutics.
Human Microbiome Drugs, By End User
In 2024, hospitals and clinics dominated the human microbiome drugs market, driven by their central role in administering live biotherapeutics and managing complex gastrointestinal and systemic disorders. They provide the clinical infrastructure, trained healthcare professionals, and monitoring capabilities essential for the safe and effective delivery of microbiome therapies.
REGION
North America to be fastest-growing region in global aerospace materials market during forecast period

HUMAN MICROBIOME DRUGS MARKET: COMPANY EVALUATION MATRIX
Within the human microbiome drugs market matrix, Seres Therapeutics is the star player, primarily due to its clinical trial portfolio and leadership in microbiome-based therapies. Its firm position in the microbiome drugs arena is further supported by cross-industry partnerships, strong regulatory know-how, and a commitment to expanding co-indications across both gastrointestinal and systemic disorders. Finch Therapeutics Group, Inc. is a rising leader, propelled by innovative research in microbiome therapeutics, the expansion of clinical programs, and the company’s decision to invest in next-generation live biotherapeutic product platforms.
Source: Secondary Research, Interviews with Experts, MarketsandMarkets Analysis
KEY MARKET PLAYERS
- Seres Therapeutics (US)
- Ferring B.V. (Switzerland)
- MaaT Pharma (France)
- BiomeBank (Australia)
- Infant Bacterial Therapeutics AB (Sweden)
- Finch Therapeutics Group, Inc. (US)
- ExeGi Pharma (US)
- Seed Health, Inc. (US)
MARKET SCOPE
| REPORT METRIC | DETAILS |
|---|---|
| Market Size in 2024 (Value) | USD 0.09 Billion |
| Market Forecast in 2031 (Value) | USD 2.13 Billion |
| Growth Rate | CAGR of 35.2% from 2025-2031 |
| Years Considered | 2023-2031 |
| Base Year | 2024 |
| Forecast Period | 2025-2031 |
| Units Considered | Value (USD Billion) |
| Report Coverage | Revenue forecast, company ranking, competitive landscape, growth factors, and trends |
| Segments Covered |
|
| Regions Covered | North America, Europe, Asia Pacific, Latin America, Middle East and Africa |
WHAT IS IN IT FOR YOU: HUMAN MICROBIOME DRUGS MARKET REPORT CONTENT GUIDE

DELIVERED CUSTOMIZATIONS
We have successfully delivered the following deep-dive customizations:
| CLIENT REQUEST | CUSTOMIZATION DELIVERED | VALUE ADDS |
|---|---|---|
| Rest of Europe Breakdown |
|
Provides granular country-level insights, enabling clients to prioritize high-growth markets, and tailor portfolio strategies across live biotherapeutic products for maximum regional impact |
| Company Evaluation |
|
Delivers visibility into competitors, helping clients identify partners, evaluate positioning, and detect market gaps for smarter collaboration, outsourcing, and strategic market entry decisions |
RECENT DEVELOPMENTS
- June 2024 : Nestlé S.A. (Switzerland) acquired complete ownership of VOWST (live-brpk), an oral microbiome therapy, from Seres Therapeutics, Inc. (US). Since its launch in June 2023 in the US, Nestle S.A. has been the main commercialization party for the product. This transaction granted Nestle S.A. full control over the future development, commercialization, and manufacturing of VOWST in the US and worldwide.
- April 2023 : The US Food and Drug Administration approved Seres Therapeutic's VOWST (live-brpk), which is the first fecal microbiota transplant product meant to be taken orally. VOWST has been given the green light for preventing Clostridioides difficile (C. difficile) Infection recurrence in individuals aged 18 and above, following antibacterial treatment for recurrent CDI.
- November 2022 : Ferring B.V. announced that the US Food and Drug Administration (FDA) approved REBYOTA (a fecal microbiota, live biotherapeutic product), a first-in- class microbiota-based live biotherapeutic. It is indicated for the prevention of recurrence of Clostridioides difficile infection (CDI) in individuals 18 years of age and older, following antibiotic treatment for recurrent CDI.
Table of Contents
Exclusive indicates content/data unique to MarketsandMarkets and not available with any competitors.
Need a Tailored Report?
Customize this report to your needs
Get 10% FREE Customization
Customize This ReportPersonalize This Research
- Triangulate with your Own Data
- Get Data as per your Format and Definition
- Gain a Deeper Dive on a Specific Application, Geography, Customer or Competitor
- Any level of Personalization
Let Us Help You
- What are the Known and Unknown Adjacencies Impacting the Human Microbiome Drugs Market
- What will your New Revenue Sources be?
- Who will be your Top Customer; what will make them switch?
- Defend your Market Share or Win Competitors
- Get a Scorecard for Target Partners
Custom Market Research Services
We Will Customise The Research For You, In Case The Report Listed Above Does Not Meet With Your Requirements
Get 10% Free Customisation
Growth opportunities and latent adjacency in Human Microbiome Drugs Market